NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209505_1013261

Scaffold Ga0209505_1013261


Overview

Basic Information
Taxon OID3300025690 Open in IMG/M
Scaffold IDGa0209505_1013261 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110331 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3439
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010466Metagenome / Metatranscriptome303N
F098670Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0209505_10132611F010466N/AMRKLSFVVVFLLVQLNVFAQSAELEVGYDLAQEMLQWEEFNSTHKAESDLYLKRMNIAFDFNWPLVEAVDQILSKVDGAIPAMIEDSCDGRRKTWRATSVFVSLALYSEGEKRMFYLDLANHIAKRSDSYSTYAAVLLLEYVESIGSGAVEKRRSMLLAYVQAYEEEIGIEFTQRIYAFLEEK
Ga0209505_10132614F098670N/AMTTSKPNLLRIALANAIILSVLLTLFVSTSSPKITEFIQVLGLTLASQFLSSYCFLRFVFSRSSPSRKPLITLFLSSIASFSSTYLFWAFSFLLNYLHIPNFNDGNYFEVQGNFLGLLVAPIFMSFLTIWVIVIGIIAYGVSDALLKRI
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