NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209505_1075923

Scaffold Ga0209505_1075923


Overview

Basic Information
Taxon OID3300025690 Open in IMG/M
Scaffold IDGa0209505_1075923 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110331 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1008
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002093Metagenome / Metatranscriptome594Y
F004235Metagenome / Metatranscriptome447Y

Sequences

Protein IDFamilyRBSSequence
Ga0209505_10759232F004235GGAGGMPIAPNRTVTALIGEQDFIGKAITMIAVDWDVDADASREAMEAVSNTILSRATILAAGAVYDTGTKQDFLLEGDLTSTLNNFTSLDGTVSGTLAQVLVEDIINLGTVDSINFGSGTVAVTIKTTFKYA
Ga0209505_10759233F002093AGGAGMAYDTSLPAGGPGNFVSPNTAHEADGVEVDFITVDYISAMNGEVTEPRAAANTGGLELSMQAIQNQGVNILGKGVLSNSNTEQTYMVRRDSLDTISSTTTVAAIQAAVRALNALTPDKVTATISSAT
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