NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209653_1030826

Scaffold Ga0209653_1030826


Overview

Basic Information
Taxon OID3300025695 Open in IMG/M
Scaffold IDGa0209653_1030826 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2291
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020468Metagenome / Metatranscriptome224Y
F057206Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0209653_10308263F020468AGGAGMPLVKKHVSLAAGATSDQILAGTTYEYVGPGTRLVVAAAAQDTTGSLAQGVDSEVVMNFNVNNAEFARDANVSLAGGGEPVGWKGGYVMNDMVTTAAERNRPIVTFTNNSAATREIDVAIFIGG
Ga0209653_10308265F057206N/AIYGLIFASILNIIGLYIAIARVAEFKKSVQGLDWEAVATLLGDVATVKRSITRLNGRLNGMDNATPQFDWKEQATRALMQPEPTKQVGG
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