NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209653_1190523

Scaffold Ga0209653_1190523


Overview

Basic Information
Taxon OID3300025695 Open in IMG/M
Scaffold IDGa0209653_1190523 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)568
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040934Metagenome / Metatranscriptome161Y
F050768Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0209653_11905231F040934N/AATIDILDLALDQIDEGKTDSAKDTLITYRDKLQKEVNEFDKWAKTQSDIHGMLELESEFEGGK
Ga0209653_11905232F050768AGGAGGMLLEWTILILLILAFAIMVFRSGEIYLYLSLVFGSIIRDIQNMINSITGRKK

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