NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209532_1008168

Scaffold Ga0209532_1008168


Overview

Basic Information
Taxon OID3300025696 Open in IMG/M
Scaffold IDGa0209532_1008168 Open in IMG/M
Source Dataset NamePelagic Microbial community sample from North Sea - COGITO 998_met_02 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5877
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (4.17%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, sampling site Kabeltonne
CoordinatesLat. (o)54.184167Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046070Metagenome / Metatranscriptome152N
F048244Metagenome / Metatranscriptome148Y
F056151Metagenome / Metatranscriptome138Y
F090610Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0209532_100816812F046070AGGAGGMNLKKIKELRNIAHDAQTKMDLISKRIMQGGLSLDQQILHLDNFTANQTRHMLCNEELIKLLKNE
Ga0209532_100816814F090610N/AMKMHKVWRLYIIDNKSITEISKELNITKNKLKLKYGLK
Ga0209532_100816820F048244N/AMKVELTQREIDRLYFDLKDYVKVLYNVDKLNELTENEKEESKIELNLIEKFSKL
Ga0209532_100816824F056151N/AMSNLKNLKTNHYISKILKVKKLKLNNNTYFGFLINDLQNIKLKNKLEIQNVIEFNSKGLTFINKDNIKKSTLQSI
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