NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208771_1021957

Scaffold Ga0208771_1021957


Overview

Basic Information
Taxon OID3300025698 Open in IMG/M
Scaffold IDGa0208771_1021957 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKX (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2130
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAce Lake, Antarctica
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029952Metagenome186N
F098916Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0208771_10219573F029952AGGAMKNLTQADVARLFEDAGLTIDIRGSLRVTHKTGTFLYDIEDEDDSGVYIAMHQDTIDADAARAVANEKYRVEEERRVAEEEELKAAFLKTDEGKEWAEKSAFPTIDFSGGSETDFTGIFANCADLSGGKPWLK
Ga0208771_10219575F098916AGGAGMNVTEITARLYAIGAAILDKTGEKPVMPPELSINDDVCRIKLYRAYGDGRTYTIGTAKGDTPQAAFDDADRIIAAQPSPDTAKLHRHMARVADCIDAAHSDGIADEYVTPLRVTVKAMSDNLLIAPDASTPTKG
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