NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209771_1011076

Scaffold Ga0209771_1011076


Overview

Basic Information
Taxon OID3300025701 Open in IMG/M
Scaffold IDGa0209771_1011076 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_59LU_5_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4171
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001222Metagenome / Metatranscriptome743Y
F003188Metagenome / Metatranscriptome502Y

Sequences

Protein IDFamilyRBSSequence
Ga0209771_10110764F003188AGTAGMIEPRKKVRQVLFSIHPLSYRIKEKSPSNEHMNKKIFIEVLEQLKLIEERRDFMEAEIGMDMTQYEDQFFSVIENLFKLAFNKQQLGLIQLYLYQLVPDKEWDGTITIELGKEEKVVDFKTPENVWNTINLFTNG
Ga0209771_10110766F001222N/AMKQLEKLVKEVITEAAKINFAGHSFMLKVDTNEDPQKKGVKVQFIPTQFGQMTPTEQNDIAIELETRLEKGLGDFDMRVERDRNLKDKTIIGFFIYIEYFDRIIRKALAGENPEQGDAGAEPEQV
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