NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209771_1040672

Scaffold Ga0209771_1040672


Overview

Basic Information
Taxon OID3300025701 Open in IMG/M
Scaffold IDGa0209771_1040672 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_59LU_5_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1775
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040583Metagenome / Metatranscriptome161Y
F054790Metagenome / Metatranscriptome139Y
F074540Metagenome119N
F096774Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0209771_10406721F074540AGGAMLTMKTDRDTATIEGLPMGEYIEWVKKTHYAYCYNGGGRIVDEFSFAWEKNNPNMADFLGAAVNFIDYYFEENEYGHA
Ga0209771_10406723F040583AGGAGMFVYLVTTNDGFVTRITTAGDPTDHPALWGRVADVETLGEADLHAV
Ga0209771_10406724F054790GGAGMNDLNSAWFDIYRAFPDNAFDYVGKPFYNDNDGTIQLWNGSKMITYAEVPF
Ga0209771_10406725F096774GGAGGMKTNKELNDYEFIAMNNLKRAALALTEGDYNHVEACVGEVLVCMYKVNT
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