NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209201_1013863

Scaffold Ga0209201_1013863


Overview

Basic Information
Taxon OID3300025708 Open in IMG/M
Scaffold IDGa0209201_1013863 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC055_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4564
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)41.53Long. (o)-90.43Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058930Metagenome / Metatranscriptome134N
F088757Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0209201_10138634F058930GAGMKTLMPKLLIGLCALILLASPHLALAQTQGGLTVDNFNDAANESSGLTSTFYTVTHYALYIFYCLGIIFMGIAAVKFKGGDMEAMGKNLGGSVMLFLVPKVVETLITWAAK
Ga0209201_10138635F088757N/AMSPKQAVKGVTLNLPWILAVLTGTRARDWKLRDGPDSSCGVDYYYGHRQGNEAYINVDQGHFTVSVAGETLFTGDPAQHPRLKRCVSEG

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