NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208195_1059518

Scaffold Ga0208195_1059518


Overview

Basic Information
Taxon OID3300025713 Open in IMG/M
Scaffold IDGa0208195_1059518 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC077_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1543
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → Ignavibacteriales → unclassified Ignavibacteriales → Ignavibacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA, Massachusetts, Boston
CoordinatesLat. (o)42.35Long. (o)-70.96Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F071725Metagenome122N
F076577Metagenome118N
F093482Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0208195_10595181F093482AGGAGGMEERTLDGLWEKIEKENPVLWAQMEKFYGPMSKKILLMELNRVKHKCKKDWRFEKLIDDWLIQSRL
Ga0208195_10595184F071725AGGAGGMKTLLNQTESEYLNLGSLDQELSWVLKIYSSGKINDLIYDGLLLYAHDEEIKAIREKLEKKEINEVGLFQELEKLAKVESLPG
Ga0208195_10595185F076577AGGAGGMNFWPENKVISLMEIVFHFGAINYELNNGKKIREMWKEFKANAIDKKLKYINPDPRCTHPVNLDVIDYCWGYAEKIEKGEEINMNELCEGCEFFKKEANNENPTQSN
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