Scaffold Ga0208195_1072336

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208195_1072336

Scaffold Ga0208195_1072336

Overview

Basic Information
Taxon OID	3300025713 Open in IMG/M
Scaffold ID	Ga0208195_1072336 Open in IMG/M
Source Dataset Name	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC077_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1328
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location Name	USA, Massachusetts, Boston
Coordinates	Lat. (^o)	42.35	Long. (^o)	-70.96	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003987	Metagenome / Metatranscriptome	458	Y
F004383	Metagenome / Metatranscriptome	440	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208195_10723361	F003987	AGCAGG	VIPALPCGTFSDGDTPAGAFFVAAFEDGDQTHHVGEYRIETVLRALRALQACGYDDVEVGSIEQGGKQHLLLIGLDGEARFGDRQTGCIAVLPV
Ga0208195_10723364	F004383	N/A	LERAFMARIRADEYREALAALQREFDERPDVIEIKRRIERCEEERRQAIAKAKAAGISKMGSFVLKERTRTVRTVIPWRFAEKFGLERFCRVANIPVGVAEKEVGKIDLEDVCEKSVTVTGVSVEYERPEVQP

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