NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208458_1005157

Scaffold Ga0208458_1005157


Overview

Basic Information
Taxon OID3300025714 Open in IMG/M
Scaffold IDGa0208458_1005157 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC085_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8068
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)39.88Long. (o)-75.22Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018395Metagenome / Metatranscriptome235Y
F020198Metagenome225Y

Sequences

Protein IDFamilyRBSSequence
Ga0208458_10051578F020198AGGAGMIVIPHKKLKSREATMEYLLDPARLKSFILDLRAYLKSTQRQFRKEGFENDPRHCVHRGMYDRPEIVLFRRFNRFCTERKLNWEACREMMENMLSERFLCECEMVWRLKDEQVELRLNEIDK
Ga0208458_10051579F018395GGAGGMSSGLKLDRADTAYAEKAHELSIKKRNWLRHGIGTTAGKIDEMLLDGATIDQMAKKAKTTKATVSVHLTHLRKEHKLTIVKKEGVLRYDVDGVNGKKIVGKKSRKSD
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