NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208458_1019505

Scaffold Ga0208458_1019505


Overview

Basic Information
Taxon OID3300025714 Open in IMG/M
Scaffold IDGa0208458_1019505 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC085_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3163
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)39.88Long. (o)-75.22Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015605Metagenome / Metatranscriptome253N
F036594Metagenome / Metatranscriptome169N
F051104Metagenome / Metatranscriptome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0208458_10195051F015605GGAGMIDTLKVMLNDYRISSDSEIRVQPASYELGTGTKVEYPLFETPKQRFYGAKAYLNEDNWNLTLKPFAGGGAVGAFLQLSIPKNYYGNNFYSVGEKGTEAVLSKVEGELKERGVHTNLQEADISRVDTFKNIEPEEPFSSYYSLFSLLKARKAIQRGYGTTFLLSNTQQEFCVYDKLAEMRERQLETGNLPPTMRFEHRLLNKQKVQSVYGL
Ga0208458_10195058F051104AGGMLAKAIEEEAKLSQELIKEGFSHAFKAGELIQEVKNMLNSEEALWEWLEGNCSEVEKSALNNYLKLFNGETIKVEATLKQ
Ga0208458_10195059F036594N/AFCVYDKLAEMRERQLETGNLPPTMRFEHRLLNKQKVQSVYGLTRVEDIFRGGYQVIREKQVESWKNSLFNFTAEEVVLLGSRQLEQEMRVFKEKFPSNWFSKFLKAYGAYYLASYAGKEVVIEALQAFEADRMKLWRAVQVFEEAEKELLVLKQEEGSSKTLGVLYEELRRKVCLN
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Institute for Fundamental Biomedical Research
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