NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208741_10006994

Scaffold Ga0208741_10006994


Overview

Basic Information
Taxon OID3300025723 Open in IMG/M
Scaffold IDGa0208741_10006994 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE03Jun09 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3256
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (45.45%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015302Metagenome255Y
F089853Metagenome108Y
F100256Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0208741_100069943F015302GGTGGMNQDDIKARLAKFRQQIPAESRDEYYADTAARLDTIIGGDTQHFLRLQRVKNEWDALADAVPVGQGFLTFDDYVREYYGVKLVYDGDNVSLAYSVVDEKKHLVFVLKFNR
Ga0208741_100069947F100256AGGMIRVSTADETFNRAWCNASRALPVHELERPRQYGQRWREAYRCRVDGGDEFPHTWYVFDQDEDYTWFMLKWG
Ga0208741_100069948F089853AGGAGVVQDSIRGSTVKVASVVAPVISSDPVSGHRYQGWTPCIEWCDENCEGPWLFISEGVFEFEWDSDYTMFMLRWA
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