NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208741_10012699

Scaffold Ga0208741_10012699


Overview

Basic Information
Taxon OID3300025723 Open in IMG/M
Scaffold IDGa0208741_10012699 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE03Jun09 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2203
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019779Metagenome / Metatranscriptome227N
F031758Metagenome / Metatranscriptome181N
F045559Metagenome / Metatranscriptome152N

Sequences

Protein IDFamilyRBSSequence
Ga0208741_100126991F031758N/ALIKNLFKLINEIFIVKPGVTFDEVILQVRNTKKRILEIDPNWKLGNKYFHYVHKVISLIDEINTLDEINLEKQRKTFRKILKTTKTLRQTDQLWRMNPIIILNFLECNSKIVMSAGQISKKPREQVPLDQVNK
Ga0208741_100126992F019779N/AMKDHPAIDFIPMDAEGEEDRYSETLDSPDIKNEIECSSERCFTPPEDDWEIINRGSDFIIHGLETLDEQLDIIATRIDTENKKEEILKNIRKGFSIIDDIVLYTTTFINEANKAKVEKFKGFISDLLDFAKTNITKTLVIVRKLRARSLLSLIPLTKDLIMEQKHIKKLVSSSNLEQVKELLKEYRCTIRRRVSRRYSI
Ga0208741_100126994F045559N/AMDLTFENIRQTTQASELRKDVAKENYKYVKLTRISNVINSLHSTDFSNEPLMHDRMNRIHILKWKIKDVNPNWHLTDQVTLMEHQILDLLDGIDHMKPWNEIGNKLKYMALFSIIENLRKIHPRWGIHLESLETPEKNHWCKCYKCHEARMQKYKIVIQDNPKTERLDESS
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