Scaffold Ga0209638_1006849

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209638_1006849

Scaffold Ga0209638_1006849

Overview

Basic Information
Taxon OID	3300025725 Open in IMG/M
Scaffold ID	Ga0209638_1006849 Open in IMG/M
Source Dataset Name	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0002-211 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6378
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location Name	USA: Alaska
Coordinates	Lat. (^o)	71.28381	Long. (^o)	-156.5985	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F052553	Metagenome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209638_10068491	F052553	GAG	MHSQPGLRAAGFLVTFILLPFLPADAATPIKIDTKNLLVTVDAAACRWSAEVKGTPMRLNNVYFLPGDDHSGWTVTPSVNNNDSNNLGSFSTVTLRGRKPGQLDFEYQISVSKTNTDILVSLGRTNKTGKAVDVDDMDYFVSRDVRLGSTNDRWIALGTHSRNRDLYELAAVVNLITPKTYAVNHVVRDSDTGNALLMGHVTALKGASRFDVRSGWQGKVPDRMQVRGYCSYKVSMPAGMSFAGEKLLIGFNTDALRAMEHQADLIAIAHDVRLRTRRPINLDDRELVANNYSRFHGWMSGGNAASAKKFFEEQGLTDFYWGLGGPGRQGSFAIYGSGGSTSGRYPEFDINGNLGTYGTAGTTPAGRARVNYPAEVFLPVRTVKYGGER

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