NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209638_1105914

Scaffold Ga0209638_1105914


Overview

Basic Information
Taxon OID3300025725 Open in IMG/M
Scaffold IDGa0209638_1105914 Open in IMG/M
Source Dataset NameArctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0002-211 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)983
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Vineibacter → Vineibacter terrae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.28381Long. (o)-156.5985Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013130Metagenome / Metatranscriptome274Y
F070394Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0209638_11059141F070394N/AMAFRVRIDPVALRQIDQFAVYLRDYSEEFAIEQIERLDRILSLNLAQSPLTWGYFPLTGAPYRAYLFSVGRRTQYWIIYTVDEDMNTVDVLSFWNSSRDPDTIDL
Ga0209638_11059142F013130N/AMSSKTATKDKRRRTTMVPVTTMVEIPVLSERERTELLTSLKKAELRAKANKATDYDPKTFKDRLIGIYRGGKR

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