Scaffold Ga0207655_1012922

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207655_1012922

Scaffold Ga0207655_1012922

Overview

Basic Information
Taxon OID	3300025728 Open in IMG/M
Scaffold ID	Ga0207655_1012922 Open in IMG/M
Source Dataset Name	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4833
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	Michigan, USA
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002548	Metagenome / Metatranscriptome	549	Y
F092677	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207655_10129223	F092677	GGAG	VLRHKKAAASADATPRQKQLYADSVRAFVEKHPHHGRARDVWQRIQLEFAEDLAAMGRYQDAIRFYRAVAVHDPTNEEAQRGLAEAFERLAVTRQKLLALEKGMSHRQVASILGKPVPGWTASRQRPGVMMEAWYYRMNGGGLAAVYFRNGKVLAAEETSNAPLGRFGS
Ga0207655_10129226	F002548	N/A	MPKSEYESPAEVHSAFFERRRLRRVRMIVELTLNLISSDRTVSHREARCLVECARKAILELFPGLEERYTRAVEPHFMRVLAQRWPEEELRFTNPYETVN

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