NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209558_1171130

Scaffold Ga0209558_1171130


Overview

Basic Information
Taxon OID3300025729 Open in IMG/M
Scaffold IDGa0209558_1171130 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI074_LV_150m_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)712
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F073414Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0209558_11711301F073414N/AVTFKELVMPCDCNKKTEADDNECPEGQSFDVSQGKCVAKESAFGDPKADSTIGDLAGEGADVGDKQTVEGCPEGHSINPDSGVCEPGASADKTDNIGQTNTSIATEKKLASIEKSLKALSEKKPTAQVGLDDGIHSWKTVAENMAPSLRKFGKFEFDINLESLRSVNTKQTRDRSGQVTESFRASPLQLQEAVSISGTHATQDLDTDVAIVPGGLSFRPVFEFAKVKKIEAGMDRAR
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