NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209745_1005195

Scaffold Ga0209745_1005195


Overview

Basic Information
Taxon OID3300025739 Open in IMG/M
Scaffold IDGa0209745_1005195 Open in IMG/M
Source Dataset NameArctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0004-312 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6767
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location NameBarrow, Alaska, USA
CoordinatesLat. (o)71.290565Long. (o)-156.788622Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F091926Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0209745_10051955F091926N/AVSRNAALASVALLLLALLVLPSSGLGSSQVPLPTLYRLHTFKLNLDRDAARERVQVYDLRQGAMMTPTTYFRVGDRRKGAWVYVQLTQVFQSPGSSESGLVQAWVRDLNGDKRVEIAVRDFATASVGETLTLYRQKKVHSLRFSKLQTIVGDKIVIARRKAPATWNVLIKANHAPDGRDHHELWRWAPAQKKWLCTTDCVPR

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