NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208459_1034087

Scaffold Ga0208459_1034087


Overview

Basic Information
Taxon OID3300025748 Open in IMG/M
Scaffold IDGa0208459_1034087 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC087_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2436
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)39.88Long. (o)-75.22Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033383Metagenome / Metatranscriptome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0208459_10340873F033383AGGAGGMKVLHHMKKENSGLARTTLEIVKYEERLGHKVCIKEPTGEMPIYGTMNGDADIHAIHSQLGLKAYHDNKPKVMFMHGEPLSSVGNGVSMKAIVDLAPMVDCFIAMRKDEMPIWQSIKRTYLVDKGVDLEVYKPLDGITEKLSGEPSILYVENWRGQRNPLYLCVAMEQVWKKYPNARLHLYNCNDKRMQETFLALSKNNKWWPFLRSLQGGVNGGEEMNLLYNRADIVVSCLYPLYARSVEAFGAGKAFIGTGYREHDYPWQCDLHPDSIAKAVINCWENYDQINYREWAEKYHNAETSTKQCLEIYGRYI
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