NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209747_1018813

Scaffold Ga0209747_1018813


Overview

Basic Information
Taxon OID3300025750 Open in IMG/M
Scaffold IDGa0209747_1018813 Open in IMG/M
Source Dataset NameArctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0011-311 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2857
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location NameBarrow, Alaska, USA
CoordinatesLat. (o)71.290565Long. (o)-156.788622Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012538Metagenome280Y

Sequences

Protein IDFamilyRBSSequence
Ga0209747_10188132F012538AGGMSATVDQPDRQQTVVTAKGPNPAVLSLNRALQAVLASEEGAVIGRAVAQIVRGDGWQEAKSSAVMVEAVIGWLGRDVVTPIGFYSNGTGPVEALAKVGSYYITGRGIDHEDDLIIRCCERHRGARFSQSRIEEMDLSARNSRFTMGTPLAQRAADRLAVLLAEELDPEIARVVLGS

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