NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208150_1025681

Scaffold Ga0208150_1025681


Overview

Basic Information
Taxon OID3300025751 Open in IMG/M
Scaffold IDGa0208150_1025681 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2068
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001807Metagenome / Metatranscriptome631Y
F007026Metagenome359Y
F019817Metagenome227Y

Sequences

Protein IDFamilyRBSSequence
Ga0208150_10256812F019817N/AMPATATPALTLNQRNLYAYFLNHKEKHSHTPCFVPKLPAQSSRLEQYLQALNKLEQYELIRVDRTSVNYTGWIMLEPKSA
Ga0208150_10256813F007026N/AMSYPEINWTKNEYKQLEQALDILKAVIERESKRHQMDEHLVPGDNDIVQEAIGLLEEIIDYDPTPNEPGEPPITLDEMHTAAWKEHQAMHS
Ga0208150_10256818F001807N/AMTVLAIENTSFTDTHVIVTAVVDEMRLLYRATYLDPEEWAPALCQTTIELDPEEPIPLDEDGFCAYLDDLDPQWQLLDTSIGD
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