Scaffold Ga0208150_1094534

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208150_1094534

Scaffold Ga0208150_1094534

Overview

Basic Information
Taxon OID	3300025751 Open in IMG/M
Scaffold ID	Ga0208150_1094534 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_DNA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	980
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium TMED167	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.283	Long. (^o)	-75.3633	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F067700	Metagenome / Metatranscriptome	125	N
F082630	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208150_10945342	F082630	N/A	MKNAIEIGFLATALFMLSGCAALEQATGWAYEAEVTTQVLPDGTEQSITNWVTKPNVKTGITIGGQLAPQPVGSIASQALIALLGIGAAIRGRQWKKAAVSGVEAAQEFKAALNKSNAKGKLDGILGNLKTQQKAAGTWGLIKSILGKI
Ga0208150_10945343	F067700	N/A	MAEPWGEWFKVPTIGVIGFTVTGSTIDEWLRIAIAIATLVYTIAKAGSAVIEFKKKRNEKRN

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