NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208899_1000794

Scaffold Ga0208899_1000794


Overview

Basic Information
Taxon OID3300025759 Open in IMG/M
Scaffold IDGa0208899_1000794 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23125
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (65.91%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001839Metagenome628Y
F021402Metagenome219N
F072753Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0208899_100079427F072753AGGAMNNNGHIYLSKIKYDCLSFISNFIKQNKFSPTYKEIGEHFSFSRARAGAICAELFKLGLISKGKAAHRKIRMTDKQSTQIPTLNFNKEYSTLDLRR
Ga0208899_100079439F001839N/AMKTFEKFDSYLLNNKVLSANEKVVYLICKSFENAPQGCRVSHQYLMDRTGIKTRKTLIKCLDRLTLFGMLARKQINNSTCHYVFEKELMQEYIKHNQNKRRKIKLSKNKNNPQFHQQIDNVIHIVKKDK
Ga0208899_100079442F021402AGGAMITTNLTIDELDRFLQISSFCDSKMPKVKAKTLPTMFKVIDNSIGIGDDKDSIKYSDKHLARLKITLTSRQITIYDFIAILMLDATEKDRELLYLRNFPQRKSLRQMKRMYLDWSHTKIGYEYNKSLIAVCKIANKNLKKYLTS
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