NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208899_1003437

Scaffold Ga0208899_1003437


Overview

Basic Information
Taxon OID3300025759 Open in IMG/M
Scaffold IDGa0208899_1003437 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10205
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (95.24%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001873Metagenome623Y
F002942Metagenome518Y
F004131Metagenome451Y
F052561Metagenome142N

Sequences

Protein IDFamilyRBSSequence
Ga0208899_100343710F001873AGGAMMRFSMVAALAVLAGGAEAGVITMSEDLSLGGRFFPEAIDGKGELIYFDNTDIGGGGAVWLSADGYDNNHLERQYEAGGFRYGIKRIPGAVVDESEFATVDWIQHKRDGRLEFGGNDSRGLVEFFAESDEVLEPGYLDITLRNDWEFGVWRLNGDLLYEHAEGESSLKTFRYNLPTGSDGLRFDFAGSGTADGVIERIEYHEYSTPVPEPGIGDLLDLIGNGIGGLIGW
Ga0208899_100343713F052561GGAGVEKLSVGDIWLIGTQLAKRLQVSKTGLYRAAESGELRTSSTACGRLATTLQEAERWLQRNRA
Ga0208899_10034375F004131GGAGGMQATRTTVVADVTEFPFSIMRRQDITPLVREAAELLWPAERRRVTVLLRAPEYWDESENADLEASEELADICFDLFVEASR
Ga0208899_10034376F002942GGAGGMSDEQFTAFTVLLAAISLPSVSLWLAWAWDFWQYGSEAQR
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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