Scaffold Ga0208899

Basic Information
Taxon OID	3300025759 Open in IMG/M
Scaffold ID	Ga0208899_1010993 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0208899_1010993 Open in IMG/M

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5018
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (75.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

5018

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (75.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.12	Long. (^o)	-75.25	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.12

Long. (^o)

-75.25

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008915	Metagenome / Metatranscriptome	326	Y
F015659	Metagenome	253	Y
F016879	Metagenome	244	Y
F017045	Metagenome / Metatranscriptome	243	Y
F092873	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208899_10109931	F008915	GAGG	MENNSITLDLYEMQSAAHLGILRCLESKKNKESWGYNYKGSLNDQMAKSISGAMGEVAASKFLGIKFEYHCNVGGVPDLIFKDLKLQVRTQLPKNNNSLIIRPKAKPGELYILVIDEAPNFKILGFVNSTFVLGQEQWKTTFGLDRPFCYSIPPDKLTPIELLKNGTWN
Ga0208899_101099310	F016879	AGGA	MSVIKESFFEASFKTIEEFDNAEVAAVSNVGDYAELTIMDIKLDKSVIKTNQEKESTDGDKEQQLVEKI
Ga0208899_101099311	F017045	AGGA	MATRSNSLLRRYDKLNRLHGEIMQKPKQNSGQCVHSLQAFKKYIKTFRQIVLVENGDATFKYTQL
Ga0208899_10109933	F092873	N/A	MNNILNKKIIEIATKSGYKSEFVESYMIKKELTAKGFTFRRFALDQLLKKNSKKISDFIKDTYLPKEQKNKFAQISKILNPKKDAPKYYTENDLAFDLSHWFNSFSNGDVLVSPEYFVGNNVEISVVGSLYGNGQVGLHKGKEITKINIHPKYANCHAIESQIGSSRGYMRLFAPSKSISHAANNRFGFAQDKKSKIIWCGYIEPQSNGKFNILDKSYSTGKTYGIQVENISLSWSAEIKAEYYPTFYNN
Ga0208899_10109936	F015659	GGA	MKERTLQDAIVQFRKNIDDSDYANLGAKGKYLTVPYRIKFVRDFFGERMSIQTDSTELANGSHKFKANIYIDDKLVSVGESKQMKNADKEFEKQQTVSIGRGLSILGFFGDELATAEEMEQFLKPKVKEVAKAKPIVKLVPKAKVNIEELANDWIEVLKKTAENSTSLSNYEKNLNVLRKEYISDLHQIYTDLIQQQRIDSAYISLQKQITNRKI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208899_1010993

Overview

Ecosystem & Geography

Associated Families

Sequences