Scaffold Ga0208899_1012251

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208899_1012251

Scaffold Ga0208899_1012251

Overview

Basic Information
Taxon OID	3300025759 Open in IMG/M
Scaffold ID	Ga0208899_1012251 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4675
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (21.43%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Taxonomy
All Organisms → Viruses	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.12	Long. (^o)	-75.25	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009001	Metagenome	324	Y
F010465	Metagenome	303	Y
F046345	Metagenome	151	N
F068603	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208899_101225110	F009001	N/A	MSVTIYLTDHNGRKVAFFYRIDSERYLTCPQLIWACRQHPEYQGRAESKEHFIEQAKDVMKQLNRNLPVRKTCDVCDKSLQGMENEGTTCNQHNFNR
Ga0208899_101225112	F010465	GAG	MKETILQPIDMTEELMFHIFNNDMNRELDGEFLDLYLSLQHYKEHLEKLEEE
Ga0208899_10122514	F068603	N/A	MKLINKLPTASDQIDKETEKLFSPVNLIDKAMPIILLVAWIAILLAIFSS
Ga0208899_10122517	F046345	N/A	MNIKINVREDSMGCLYLTPVKQSYIDQIIEYLKEFNVDSDGSVLIQSDYDVESFYEDCTYRQRKDIQSGWGANMLFDAWTFLNYVGWDACEALELK

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