NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208899_1023888

Scaffold Ga0208899_1023888


Overview

Basic Information
Taxon OID3300025759 Open in IMG/M
Scaffold IDGa0208899_1023888 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2993
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015734Metagenome / Metatranscriptome252Y
F019756Metagenome / Metatranscriptome228Y
F050011Metagenome146N
F074154Metagenome120N

Sequences

Protein IDFamilyRBSSequence
Ga0208899_10238883F074154N/AMNFFQLQNKLFYSDKRKKAEYLDSEGEQAFVPFLLNRWLSMYSKETVGFVNETLNKYCGIFDTDKQKTYRFYFNLIPRLKFKRISYVKKIKKDKDKQDEIDTLKMIAKNKNISVRELEMYKNLLD
Ga0208899_10238884F019756N/AMAQRSIDTLAPQKHLIDLSTHSEGDVGLTDDFELTMIFDDILLVEYVDENDTGEIQRNGIFVPTNALTKAWRKAKVVLAGPKVEYTKPGDVVIFPNNLGVTVANIDVNGVKVKKGIFLNEDRLFGICKLKDDNSKSSS
Ga0208899_10238885F015734N/AMIIQRAALDSLLLNNVCEIRFVRRRPRAGDGPTRRMLCTKSYDLLNSVNGRTTLNYAPPRGPKKVNEAADNVLVVWDILMQDYRTISMNSCDLIQQIPVNEFWEYFNENIYPMSPEQKYNFMNS
Ga0208899_10238886F050011N/AMNSSLELFSEYIKPYLLQNVAICTDRKIIRKGKLRIFQIKQHYAKLTLEDEVRTRVYEIPYPFNITTDGRKTTFCYKLNEFLNVGDLQLQVKFLDSTKKSKIYNENLYIMPLEDVDL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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