NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208899_1029570

Scaffold Ga0208899_1029570


Overview

Basic Information
Taxon OID3300025759 Open in IMG/M
Scaffold IDGa0208899_1029570 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2587
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003677Metagenome / Metatranscriptome474Y
F003834Metagenome / Metatranscriptome466N
F009561Metagenome / Metatranscriptome316N

Sequences

Protein IDFamilyRBSSequence
Ga0208899_10295702F003834AGGAMSSSKTPIRQDEKDYLDHFIETKYDDRKNILKTEMQDTIDKEAEDNFEAFKDKLKINKMHDDVKVLYDDHAKFANEMDSILLQKKGKLDNAIHVLEDKLEQWKKVRKWKEEISHSLLKEPDELDRLLKKLCHEETERDYYSGPRGKAIQMLDMSKEYCKNLLNAGQSLSTVWGVLDQEMGKEKINTNTIPKQEFLSITK
Ga0208899_10295703F003677N/AVGLSPYRKAIMVDEALYFSEKDVGKKVYEIEYEATYITKWQVLADNEAEAFDTWLAENKQDLVTEDGTNCVCSYVKDYTQLGKTQIIAEIKHNKEDDEVYADES
Ga0208899_10295709F009561GGAGMTELKDEHLEVISKNKAKKHELDKLVEQLSDARESVAVLGNAIECGFLHDKHSLILQEWLVEYEQLSEQLDTHLTEVRDHG
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Institute for Fundamental Biomedical Research
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