NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208899_1043588

Scaffold Ga0208899_1043588


Overview

Basic Information
Taxon OID3300025759 Open in IMG/M
Scaffold IDGa0208899_1043588 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1977
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003106Metagenome / Metatranscriptome507N
F032086Metagenome181Y
F048963Metagenome / Metatranscriptome147N

Sequences

Protein IDFamilyRBSSequence
Ga0208899_10435881F003106N/AMTEEKKDDGSKATRGPTWRMREWGRTAYRNRQAKLRMDGESSQTESAKRLLRVMAPRLGKRVDDFMYTFGGNTEHTTPLFLTFVLDMCPYQIASMALQTLLDNLQFNLPVGRMAYKIGKAFENQARWDKAMELMHPHKKDLLALDDRSKAMKLKQFYDYEEERFTLWDTKCKAGLGAWLLEEIRIETGVWEIGFASGQKGHKPERLCVPSGSYMDWVKRFDAWKETTRVFKMALPDEPVDWYELIGG
Ga0208899_10435882F048963N/AMIEYADFEPTDLPFDWSGVDHEEIKRGFDFFYANNQITGFKMDASGNYVRDQDGKLIAYRTSKQRHQPKSWFNNYYQ
Ga0208899_10435886F032086N/AMTSNNEPTFLNMNDLCDDSLEALIQHYLKLKHRMPDNISVRERLLELEREQFEREKETND
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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