Scaffold Ga0208899_1049257

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208899_1049257

Scaffold Ga0208899_1049257

Overview

Basic Information
Taxon OID	3300025759 Open in IMG/M
Scaffold ID	Ga0208899_1049257 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1814
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.12	Long. (^o)	-75.25	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001655	Metagenome / Metatranscriptome	656	Y
F016901	Metagenome	244	Y
F026889	Metagenome / Metatranscriptome	196	N
F055289	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208899_10492572	F016901	AGGAG	MIGMNTLYVIELYDDVWSQVFTTDDVDEAKYYVKTKQDNGKRYRIVKHTTEVIL
Ga0208899_10492573	F001655	GAGG	MKQPENNHTKMFGNDGPVGNDAEIIVYYEYNGPAEPVLRIPFWYYKEELGMFEHFEAAVHRTAKALKESYTYWPEGYVHVQTVINDEYVNMI
Ga0208899_10492574	F055289	GGAGG	MRITTAKKYYNGPANVDNNGIVIDTSKYLIDIYLTRSFKLSTAYVPADEFSGKSYIAWLGWLHIEITGHEVLEA
Ga0208899_10492577	F026889	GGAGG	MKDVIQEYLALVERTVRTNDIFAYQQIEELEEQYPDLADLVYQSAGPMGYDIQNNEVTA

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