NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208899_1079588

Scaffold Ga0208899_1079588


Overview

Basic Information
Taxon OID3300025759 Open in IMG/M
Scaffold IDGa0208899_1079588 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1283
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046345Metagenome151N
F068603Metagenome124Y
F088798Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0208899_10795881F088798N/AMNKQIEKLWDLIVNYELATESTLQLITRLNGYTLETMEDVLYALTGYHSYDQFMENER
Ga0208899_10795884F068603AGGAMKIINKLPTASQTLDKEVAKLFTPAPLEKLAPFILLGLWVAILFAIFS
Ga0208899_10795885F046345N/AMNIKINVREDSMGCLYLTPVKQSYIDQIIDYLKDFNVDSDGSVLIQSDYEVESFYEDCTYRQRKDIQQGWGATILFDAWTFLNYVGWDACEGLELK
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