Scaffold Ga0208767_1101190

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208767_1101190

Scaffold Ga0208767_1101190

Overview

Basic Information
Taxon OID	3300025769 Open in IMG/M
Scaffold ID	Ga0208767_1101190 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1153
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.12	Long. (^o)	-75.25	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F045720	Metagenome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208767_11011902	F045720	AGG	MKVGVWMPLYGRPLVLRAALESFKAMRIRWRNMGIELELCVGWSLPDDLTQVVNHYGYPYASVFAENDPLSYKQEAILDIMRGRFDYYLQIGSDDVFIEEADIYYEEALTRGVQYVGCRSVYFIEPSTQRAVSTAMTHTSVNSVFGAGRLWSAEAMDKVLENGPIWPKAMNNQLDLLSEKQFKAAGVWMETFEEERPFIVDIKSETNIWKF

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