NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208767_1138120

Scaffold Ga0208767_1138120


Overview

Basic Information
Taxon OID3300025769 Open in IMG/M
Scaffold IDGa0208767_1138120 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)908
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F085398Metagenome111N
F088541Metagenome109N
F100724Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0208767_11381201F100724AGGAGMTRVQLHQWLAWRKELGLPPVPQATVNNLLNDRRTFVIDQPRTVQAFRKVTYLWGLIKVYKPIKLDK
Ga0208767_11381202F085398AGGCGGMKPKDWGTTDIRLTKALSLNVEWTYYAEDVSADRDVPSDPAIYEIETVWLFEEITESIIDVTDLEGKLWQHDEVLQIVEGDKR
Ga0208767_11381203F088541N/ATIVYICRITNKQTYNMKYMTYPQAQRLVPSPRDIIDHLCDQGMDAFYTAEELTSAADEIRHIAVMQVCTGISHSELACILDIATDYYFHAQAKTRWAAALDKLTAKFNALLKAANYAA
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