NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209362_1074464

Scaffold Ga0209362_1074464


Overview

Basic Information
Taxon OID3300025770 Open in IMG/M
Scaffold IDGa0209362_1074464 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_165m_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1337
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)110
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003920Metagenome / Metatranscriptome462Y
F018643Metagenome234Y

Sequences

Protein IDFamilyRBSSequence
Ga0209362_10744642F018643AGGAGMQSVILKPINAIQYTASNPTLKSLFTQVQHHVDLYQFDLVVDLLTQARHNPAYAKCRVNWDSVIAHHQQYI
Ga0209362_10744643F003920N/AMLLRVLVIYCLLTAFAYAFHLNTFAVFELKEELQIRYMNMWELLQQLEYVDADQRGIVYAEIEHIRQEIMHIIDLLLQHDHDQHQ

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