NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208427_1114382

Scaffold Ga0208427_1114382


Overview

Basic Information
Taxon OID3300025771 Open in IMG/M
Scaffold IDGa0208427_1114382 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)920
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002318Metagenome / Metatranscriptome571Y
F006528Metagenome / Metatranscriptome371Y
F016274Metagenome248Y
F066150Metagenome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0208427_11143821F006528N/AVKEKIKLSTNIDKEKLAIQTFKNIIEGSRSINGVTWNRIKNLKPKEQIICLKQLSQ
Ga0208427_11143822F016274GAGGMRNKYGLPLVYDFNIDLWDKRRIRNLEYMKWNCPKGWKSLWSNKLDQLKKNISERKNKTL
Ga0208427_11143823F002318AGGMKNKFYSVTKDLEQRNPGKKFYSFMDMEDAEIRKKEVILPLPKKYFNKIVKLLEREK
Ga0208427_11143825F066150N/AKILANYELKDMGQPIKETSCWLFFEKGKIAKHTIERLRYDSQIKEFRKLLVFAKYQPINNTIN
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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