NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208104_1004334

Scaffold Ga0208104_1004334


Overview

Basic Information
Taxon OID3300025773 Open in IMG/M
Scaffold IDGa0208104_1004334 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE29May09 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2125
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031767Metagenome / Metatranscriptome181N
F033695Metagenome / Metatranscriptome176N
F100445Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0208104_10043342F033695N/AMEGFNQEFKLAMEEVQELTRRSAMYSSRGNNGPTKVDIKAVQYYRIEVDKRIDYIQEMMEAFPFKTDIFYLWKIHQNILKLLSMILSNEDQKDRCQKLNSYVKVLEKFKNETDYSYWKDYISIHENKILEGS
Ga0208104_10043343F031767GGAMNNNPTNQKKIIVKRLERKPRQNYVKTLASLKSIVEETDKLYNQFDSQEQALRKRVSGCQEWTKYWTRGGNLSKKEKSLMYYLEDISNRLIRISDMKNLEEKERLLYYLKVEISLETLHNEKYQKRDVPTNKNS
Ga0208104_10043346F100445N/APIVNEAQAKLIPLAFDLNNRIWMEGYVLCCSFLENAAQILQIQIMDGQGFETMVEYDVELNTHINQVLNILNKEQSITPDMTVWVMSLLNHMLYLKNIVFNPDPNDLIKFIKPLQIIKLNIKESRVLMEGALTWVDKKMMMQ
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