Scaffold Ga0208699_1003365

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208699_1003365

Scaffold Ga0208699_1003365

Overview

Basic Information
Taxon OID	3300025776 Open in IMG/M
Scaffold ID	Ga0208699_1003365 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Deep Pacific Ocean - MP2097 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2758
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	North Pacific Ocean
Coordinates	Lat. (^o)	14.53	Long. (^o)	-118.77	Alt. (m)		Depth (m)	294
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003122	Metagenome / Metatranscriptome	506	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208699_10033655	F003122	GGAG	MIELLIFGLVLLSVICLWLLIEGRKSPKFLIWFIPLVLVLVSSTYVTYTSILGYPRVAKPKEGLYLKHYIDEPNWIYLWVVYKERIPISYQLVYSREIHKALEGVKKKSEGEGKFMVLREEVHGEAGEEEGAKNKKEGGITIGGDISFYEWEYESDSQQKNPEGE

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