NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208388_1000622

Scaffold Ga0208388_1000622


Overview

Basic Information
Taxon OID3300025778 Open in IMG/M
Scaffold IDGa0208388_1000622 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH18Jul07 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7686
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011059Metagenome295Y
F066497Metagenome126N

Sequences

Protein IDFamilyRBSSequence
Ga0208388_100062214F066497AGGAMTEQEFKEWKTYHVTEEFFNFLKKAKVETQEAWANRQFVTDGENQFALGGVYSIN
Ga0208388_10006224F011059AGGMGNMTPEQWEARYLNEEGSNYPQEKRLEFVKDYLLDPNLAAVCRKHDVPYQTAFQWKNKSWWHNMVEEILANYKDELLAKQRQIINKTYDEIGERLVNGDETYIPNEGHVRTKVKANHLATIADVTLKANQLLQGKATSINHVTIESLADKLRTITQDAIDVTPQAQTIQQIEQTHQDSE
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