NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208869_1007569

Scaffold Ga0208869_1007569


Overview

Basic Information
Taxon OID3300025779 Open in IMG/M
Scaffold IDGa0208869_1007569 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE27Jun08 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1715
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017597Metagenome / Metatranscriptome239N
F019778Metagenome / Metatranscriptome227N
F024477Metagenome / Metatranscriptome205Y

Sequences

Protein IDFamilyRBSSequence
Ga0208869_10075691F019778N/AMSSNVVSQTELIFLYIGESRLIKRISNDILLVLHKDAKSINTIKLKELLQFKIRGRLSYLNHLAMSTVKEEAKYASALYTQLDSLLAILSSDDKVTAIKLITKICSAYRANKETVQSTAQTSNNIEKMEIG
Ga0208869_10075692F017597AGGAMKKIFRSEKLLIKLAIKRKELIKIVKSSKSTLIKTEMITRILITALKAKQVIAIRFQVNRTNNLQIWG
Ga0208869_10075693F024477N/AMSYDIIKISSKASSFELLIKNITLIEKVEDYYKELDQITSYRFNCHGKPDPDIYFMKDIIKIRLIELERLQTQRIKELNYLNEKDL
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