Scaffold Ga0208386_1002003

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0208386_1002003

Scaffold Ga0208386_1002003

Overview

Basic Information
Taxon OID	3300025781 Open in IMG/M
Scaffold ID	Ga0208386_1002003 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH16Oct07 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4594
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (81.82%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Crystal Bog, Wisconsin, USA
Coordinates	Lat. (^o)	46.0072	Long. (^o)	-89.6063	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020485	Metagenome	223	Y
F035995	Metagenome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208386_10020035	F020485	GGA	MKLFCKHKQHWEITNGKLILGAETDEYLASQLMLMTARLEAEIRLDIYDQICAIDFTSDRKRIVKSGIENVALQVQDICAQIAIGGKE
Ga0208386_10020036	F035995	AGGGGG	VSVVTPVQVEARLKDLSRLIDEAHNDLVDAEAAYHQHKAEYEIAMASTRLSLASKSSPTGKNYTVGEREDMAILENRDAHRIVAADEAVVKANRANVARLRVQVDIARSIGTSVRTGMDA

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.