NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208386_1002683

Scaffold Ga0208386_1002683


Overview

Basic Information
Taxon OID3300025781 Open in IMG/M
Scaffold IDGa0208386_1002683 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH16Oct07 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3762
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (36.36%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016243Metagenome / Metatranscriptome248N
F018323Metagenome / Metatranscriptome235N
F045532Metagenome / Metatranscriptome152N

Sequences

Protein IDFamilyRBSSequence
Ga0208386_100268310F016243N/AMNEAQITKIVMRLATRSKWSIEVRRDKVSQMIAEEIQRSDELNQALMELDILLDKLQKVYQEVDDVCEHLLKHYLKSEYIQMHRPSFLNTNTIKDSKAEFTQRLLEVSDSRKSLKVQDSEITTHSIYHKIDPGLRIALNNNIVTLLTIDNELIDLKVMYEFLIENCENE
Ga0208386_10026832F018323GAGMCNNKINDEVVELIKSLEENSVDLTSAMDTVRVLDELELPLFEHILINQICKDLNAISTEINHDQEDERVFRKIFHKVRALKLKNPEWKFKHRAKKSTYSRKRMIEEERLTLSQEEARELVKFERETEIINQINIEKSFEENRHLFKLIKESRFTRVGRRTWLSFYRFPDLRKITIYNEKNFLCKIEGIRRKYSRLKWSIVL
Ga0208386_10026838F045532AGGMETLELIEFPNPYRKTSFKAYLFWTGISTVANHAIANTITCIFIRTYLAMIVALILLFNKNKSIIHRLMIYLIYLEVNPRIRIIENLNYSVMVIRLGMLSMSLEQIILNPNMEIAHAIILIHLIVVAAYLPNYIDTQEAIAKTIFYFV

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