NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210047_1059955

Scaffold Ga0210047_1059955


Overview

Basic Information
Taxon OID3300025787 Open in IMG/M
Scaffold IDGa0210047_1059955 Open in IMG/M
Source Dataset NameGroundwater microbial communities from aquifer - Crystal Geyser CG01_land_8/20/14_3.00 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)899
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Desantisbacteria → Candidatus Desantisbacteria bacterium CG23_combo_of_CG06-09_8_20_14_all_40_23(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah: Grand County
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002777Metagenome530Y
F038538Metagenome / Metatranscriptome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0210047_10599551F038538N/AMQATMKNTKMPQSKDYKSEALGREILRKINQIGEKTYKLKKDVNDVCGLILSKPGATMFVEGHKAELWKE
Ga0210047_10599553F002777N/AMENTKKNTGANPHISMNNEIMSGRIIQKIDEIGRKTYELKQKENAFYAEVKEESRHTEIVGTDKLREMVYEKFGPEWKKIEDGKNEVNWMIYRMYISIEGEEENIKKK

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