Basic Information | |
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Taxon OID | 3300025806 Open in IMG/M |
Scaffold ID | Ga0208545_1028651 Open in IMG/M |
Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNA (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1811 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Delaware Bay | |||||||
Coordinates | Lat. (o) | 39.283 | Long. (o) | -75.3633 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000681 | Metagenome / Metatranscriptome | 939 | Y |
F003326 | Metagenome / Metatranscriptome | 494 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208545_10286511 | F000681 | AGGAG | MYKRDKHYNEKISKADLEKELSTHYTGETGLVINLMSYAIQDGIVETRHELGVANEELWSLNDWPEGEGFGSSDRSEYIRRIKETVDSERKFLQVEDELVQINKLTECPNNDTVRKYMIINEELRQ |
Ga0208545_10286512 | F003326 | GGAG | MATLKQKKKLIRTIKNPIRYFRLNFSRYGGEVAMGTITKDQWEYWSDNDGFEEYMGLVDSDPDDANKEIPKRAQFDRPFYEYGDICHLSGPEWADGQTLYIEEIDKDGNPLDDGEGGYVPDIQHDFEDLESLGALIKCTEEHNTGSKSCENEYYVFGQYFNKGGWHTPDIIKTGPDGIEIDKLTIEMVNADGFKVFNEIEYDGEVYYLEEDSTGKSSSFYVAKGDNLK |
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