NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208545_1028651

Scaffold Ga0208545_1028651


Overview

Basic Information
Taxon OID3300025806 Open in IMG/M
Scaffold IDGa0208545_1028651 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1811
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000681Metagenome / Metatranscriptome939Y
F003326Metagenome / Metatranscriptome494Y

Sequences

Protein IDFamilyRBSSequence
Ga0208545_10286511F000681AGGAGMYKRDKHYNEKISKADLEKELSTHYTGETGLVINLMSYAIQDGIVETRHELGVANEELWSLNDWPEGEGFGSSDRSEYIRRIKETVDSERKFLQVEDELVQINKLTECPNNDTVRKYMIINEELRQ
Ga0208545_10286512F003326GGAGMATLKQKKKLIRTIKNPIRYFRLNFSRYGGEVAMGTITKDQWEYWSDNDGFEEYMGLVDSDPDDANKEIPKRAQFDRPFYEYGDICHLSGPEWADGQTLYIEEIDKDGNPLDDGEGGYVPDIQHDFEDLESLGALIKCTEEHNTGSKSCENEYYVFGQYFNKGGWHTPDIIKTGPDGIEIDKLTIEMVNADGFKVFNEIEYDGEVYYLEEDSTGKSSSFYVAKGDNLK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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