NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208828_1073170

Scaffold Ga0208828_1073170


Overview

Basic Information
Taxon OID3300025807 Open in IMG/M
Scaffold IDGa0208828_1073170 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_160m (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)788
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameRwanda: Western Province
CoordinatesLat. (o)-2.0288Long. (o)29.1756Alt. (m)Depth (m)160
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F086602Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0208828_10731701F086602N/APNPNPLRLFFDKGGSCGHVFRDLLKFPSVFFYTCAKRTEENVAAWERLPDRAFETVPFTFDKHADRPADQRPAYRLADTEMTINVWEARHRVETVTLRAIVLHDPHGKQPAERWPVTLLTNDRTRDAHALLNEQGDHWGQEFAHRIGRHDLQSDILPTGYVLKTTRDEQGELHREVEFDNTAFFLSAWLHCLVFNLMTLFAQAMGGEYVHLWAGTLLRKFIRRPATLYLIGKVLHVVFDPFPGQDELQPLLDKLNDKHVALP
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