NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209199_1018648

Scaffold Ga0209199_1018648


Overview

Basic Information
Taxon OID3300025809 Open in IMG/M
Scaffold IDGa0209199_1018648 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110523 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4444
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009493Metagenome317N
F051114Metagenome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0209199_10186482F051114N/AMRNKVIDEVLKTNAQLFQQLGTDSTKAEVQAAKIQERKNLRAVREENPELVGRLLNDGDK
Ga0209199_10186489F009493N/ATAAMRKNKEIVLTLGKVPSLNSFYAGSHWTKRKKAKDAALETIKGQLGYNKGAAYNSFRVTAYVRYRYDLDNSIIAIKFTSDALKTLGWIKDDSPKYFRRLLLVWSEQIPKDEAQITIELSDENP

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