NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209193_1017724

Scaffold Ga0209193_1017724


Overview

Basic Information
Taxon OID3300025816 Open in IMG/M
Scaffold IDGa0209193_1017724 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_100330 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2304
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005848Metagenome / Metatranscriptome388Y
F078540Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0209193_10177241F078540N/AMVKFNETLIVGIGLLAALVFSKGSSILSRTSNVPFIDPYSLQLGEAQVNAIEKGKSNIETLQNVKSSNLEIAEEILGYERGIANTQIDYLQNELSKTQSFISQQQKIPAGSTFGVPSTGKSLLAKFDSEFAQLSRAWTGEKGPLNQVSIFPDVYIPFSQSTRAAFAQQAAYETAQQSIKEANQLIFRQQTEIDRLEEEYQTRFGGLSRYG
Ga0209193_10177244F005848AGGAGMGIPVQRTYTGTPAALNAPVFMIDQQTLQNNFLTLTPNVLQDIVNLVDPAAGLLYQFTLVKNGNSTAIRAFSTAISASTAGRVPIGPVNMSSGSYQWSCTQTLGAPTATSILVRYSSPLN
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