NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0210144_1000492

Scaffold Ga0210144_1000492


Overview

Basic Information
Taxon OID3300025817 Open in IMG/M
Scaffold IDGa0210144_1000492 Open in IMG/M
Source Dataset NameWetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_PWA_D2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20880
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (82.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location
Location NameUSA: San Francisco Bay, California
CoordinatesLat. (o)37.926434Long. (o)-122.509186Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061612Metagenome / Metatranscriptome131Y
F091541Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0210144_100049218F091541AGGAGMASKSILGRQSSVFGDRRERSKRIPFGLGKPAPHPNSDGGVGVGEAQHCLKCGFGNVPVIEEVVWTIPLPLTATEALATLGDTVNLLSGSSSVPGVASIDSTFLINGILQTDILTRGVGVHIFCEPMSFSTIGNAFLAPAVATQTLPASPDVFTLNDLAAGALGDDVNTDPNDPNFFPAVFEFGAPVWRAGWNFINAYQFQWRTSQRELVLNELAADVSYFGSFADAAASGTSEIPIIEYVALVNAVYRSKNSATVFLPVSFRRVGSVGQNGNPVGPPAGVNVGVFHPTRDFDLAPVTWGGLRWQGYGCRGQMYRPIESPCFLERGIPIGMLFVVQDAVHQAQMLESISIDNEPFGSNVQVDENLGCLTNVSANAEPGANPPTTGTGNVMLEQTLDANPVLVEQRVNVCRQVFKGGILKIGIKLKGWEMPGGWKAYCSKNMPQIMKGATPAS
Ga0210144_10004928F061612AGGAGMPKLIHQETMCCGYKKCPTVKVFEDGSMELTDNDAEKGSMGTIKLAPEQVERLTALAKK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.