Scaffold Ga0210144_1000931

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0210144_1000931

Scaffold Ga0210144_1000931

Overview

Basic Information
Taxon OID	3300025817 Open in IMG/M
Scaffold ID	Ga0210144_1000931 Open in IMG/M
Source Dataset Name	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_PWA_D2 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	13183
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location
Location Name	USA: San Francisco Bay, California
Coordinates	Lat. (^o)	37.926434	Long. (^o)	-122.509186	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F018371	Metagenome / Metatranscriptome	235	Y
F069741	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210144_100093116	F018371	GGAGG	MDYTNIIRPKRLTNMQEMEIHVGGPDGANRLFMYSGMAEVELCGGLPHPRWSLEVVCFDIGRTYDKSKGEEVIKILTSASLAGSRTDGVASFAGWEIFGAAGELDHEDRRVRMNIAAGARDTQAFLEQICFTVNVLAKV
Ga0210144_10009316	F069741	AGGAG	LENITFDVDELSRLDKMEQARRLEEAARQIDDVQRAAAGDPDSLDWVSQQRQYLVDMQHLIFEC

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