Basic Information | |
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Taxon OID | 3300025817 Open in IMG/M |
Scaffold ID | Ga0210144_1000931 Open in IMG/M |
Source Dataset Name | Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_PWA_D2 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 13183 |
Total Scaffold Genes | 16 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (75.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: San Francisco Bay, California | |||||||
Coordinates | Lat. (o) | 37.926434 | Long. (o) | -122.509186 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F018371 | Metagenome / Metatranscriptome | 235 | Y |
F069741 | Metagenome / Metatranscriptome | 123 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0210144_100093116 | F018371 | GGAGG | MDYTNIIRPKRLTNMQEMEIHVGGPDGANRLFMYSGMAEVELCGGLPHPRWSLEVVCFDIGRTYDKSKGEEVIKILTSASLAGSRTDGVASFAGWEIFGAAGELDHEDRRVRMNIAAGARDTQAFLEQICFTVNVLAKV |
Ga0210144_10009316 | F069741 | AGGAG | LENITFDVDELSRLDKMEQARRLEEAARQIDDVQRAAAGDPDSLDWVSQQRQYLVDMQHLIFEC |
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