NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210144_1000931

Scaffold Ga0210144_1000931


Overview

Basic Information
Taxon OID3300025817 Open in IMG/M
Scaffold IDGa0210144_1000931 Open in IMG/M
Source Dataset NameWetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_PWA_D2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13183
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location
Location NameUSA: San Francisco Bay, California
CoordinatesLat. (o)37.926434Long. (o)-122.509186Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018371Metagenome / Metatranscriptome235Y
F069741Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0210144_100093116F018371GGAGGMDYTNIIRPKRLTNMQEMEIHVGGPDGANRLFMYSGMAEVELCGGLPHPRWSLEVVCFDIGRTYDKSKGEEVIKILTSASLAGSRTDGVASFAGWEIFGAAGELDHEDRRVRMNIAAGARDTQAFLEQICFTVNVLAKV
Ga0210144_10009316F069741AGGAGLENITFDVDELSRLDKMEQARRLEEAARQIDDVQRAAAGDPDSLDWVSQQRQYLVDMQHLIFEC

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